@name tophat-2.1.2_3
@portname tophat
@portepoch 0
@portversion 2.1.2
@portrevision 3
@archs x86_64
@pkgdep python27-2.7.18_2
@pkgdep zlib-1.2.11_0
@pkgdep samtools-0.1-0.1.20_0
@pkgdep seqan-1-1.4.2_0
@pkgdep boost176-1.76.0_0
@pkgdep py27-intervaltree2-2.1.0_0
@pkgdep py27-sortedcontainers-2.3.0_0
@pkgdep bowtie2-2.4.1_0
opt/local/bin/bam2fastx
@comment MD5:e85240fd41b8b50825fea1be57e98e05
@comment binary:1
opt/local/bin/bam_merge
@comment MD5:f4ea46d7412288d42efcec1044a32572
@comment binary:1
opt/local/bin/bed_to_juncs
@comment MD5:3848d4fbbfd77604fa7af435888576d9
@comment binary:0
opt/local/bin/contig_to_chr_coords
@comment MD5:0ee6af414571bf2f706d4d121d89d6b4
@comment binary:0
opt/local/bin/fix_map_ordering
@comment MD5:809ae5bf30c5a1038429fdd7d3789588
@comment binary:1
opt/local/bin/gtf_juncs
@comment MD5:0596edf71f34a3cafa3d6b00ad33e68d
@comment binary:1
opt/local/bin/gtf_to_fasta
@comment MD5:f8e137c3b2dec5c368320861d980abe7
@comment binary:1
opt/local/bin/juncs_db
@comment MD5:0a216cd7f05eb92250ad5335455057d2
@comment binary:1
opt/local/bin/long_spanning_reads
@comment MD5:7215a16186553c472efc3851e3cbacb8
@comment binary:1
opt/local/bin/map2gtf
@comment MD5:4338b7fa46c8fe4a9d007d5be1918de3
@comment binary:1
opt/local/bin/prep_reads
@comment MD5:a650715d9f368b5f940b466dcd6f6f77
@comment binary:1
opt/local/bin/sam_juncs
@comment MD5:df6d11ed5516aa4ab5664f0843d0a5da
@comment binary:1
opt/local/bin/segment_juncs
@comment MD5:f61c804d79192488fb801b96f871a594
@comment binary:1
opt/local/bin/sra_to_solid
@comment MD5:a37cded61751f2ec37200b349668ba31
@comment binary:0
opt/local/bin/tophat
@comment MD5:835c9029bef9ca8d48e1c9edeb58bc5c
@comment binary:0
opt/local/bin/tophat-fusion-post
@comment MD5:fd8487598334d0678963d8f6c5602f09
@comment binary:0
opt/local/bin/tophat2
@comment MD5:2caaa3100672571f05f4d737ce8cc7bf
@comment binary:0
opt/local/bin/tophat_reports
@comment MD5:6f84deadf94f8922be67fc6c5c710103
@comment binary:1
opt/local/libexec/tophat/lib/libgc.a
@comment MD5:1c5a2e2043696a6ed402705e09a6b2bb
@comment binary:0
opt/local/libexec/tophat/lib/libtophat.a
@comment MD5:d225d96564f7b2c2b109d0b0c1d8468f
@comment binary:0
@ignore
+COMMENT
@ignore
+CONTENTS
@ignore
+DESC
@ignore
+PORTFILE
@ignore
+STATE
@cxx_stdlib libc++
@cxx_stdlib_overridden 0
