libpappsomspp
Library for mass spectrometry
Loading...
Searching...
No Matches
peptidemodificatortee.h
Go to the documentation of this file.
1
2
/*******************************************************************************
3
* Copyright (c) 2016 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4
*
5
* This file is part of the PAPPSOms++ library.
6
*
7
* PAPPSOms++ is free software: you can redistribute it and/or modify
8
* it under the terms of the GNU General Public License as published by
9
* the Free Software Foundation, either version 3 of the License, or
10
* (at your option) any later version.
11
*
12
* PAPPSOms++ is distributed in the hope that it will be useful,
13
* but WITHOUT ANY WARRANTY; without even the implied warranty of
14
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15
* GNU General Public License for more details.
16
*
17
* You should have received a copy of the GNU General Public License
18
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19
*
20
* Contributors:
21
* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22
*implementation
23
******************************************************************************/
24
25
#pragma once
26
27
#include "
enzymeproductinterface.h
"
28
#include "../pappsoexception.h"
29
30
namespace
pappso
31
{
32
33
34
class
PMSPP_LIB_DECL
PeptideModificatorTee
:
public
PeptideModificatorInterface
35
{
36
37
public
:
38
PeptideModificatorTee
();
39
PeptideModificatorTee
(
const
PeptideModificatorTee
&other);
40
virtual
~PeptideModificatorTee
();
41
void
setPeptideSp(std::int8_t sequence_database_id,
42
const
ProteinSp
&protein_sp,
43
bool
is_decoy,
44
const
PeptideSp
&peptide_sp_original,
45
unsigned
int
start,
46
bool
is_nter,
47
unsigned
int
missed_cleavage_number,
48
bool
semi_enzyme)
override
;
49
50
void
addModificator(
PeptideModificatorInterface
*p_peptide_mod);
51
52
53
private
:
54
std::list<PeptideModificatorInterface *>
m_peptideModPtrList
;
55
};
56
57
58
}
// namespace pappso
pappso::PeptideModificatorInterface
Definition
enzymeproductinterface.h:65
pappso::PeptideModificatorTee
Definition
peptidemodificatortee.h:35
pappso::PeptideModificatorTee::m_peptideModPtrList
std::list< PeptideModificatorInterface * > m_peptideModPtrList
Definition
peptidemodificatortee.h:54
enzymeproductinterface.h
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition
exportinmportconfig.h:14
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition
aa.cpp:39
pappso::PeptideSp
std::shared_ptr< const Peptide > PeptideSp
Definition
aamodification.h:48
pappso::ProteinSp
std::shared_ptr< const Protein > ProteinSp
shared pointer on a Protein object
Definition
protein.h:47
pappsomspp
protein
peptidemodificatortee.h
Generated on Fri May 31 2024 09:30:34 for libpappsomspp by
1.9.8