libpappsomspp
Library for mass spectrometry
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peptidesizefilter.h
Go to the documentation of this file.
1
2/*******************************************************************************
3 * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4 *
5 * This file is part of the PAPPSOms++ library.
6 *
7 * PAPPSOms++ is free software: you can redistribute it and/or modify
8 * it under the terms of the GNU General Public License as published by
9 * the Free Software Foundation, either version 3 of the License, or
10 * (at your option) any later version.
11 *
12 * PAPPSOms++ is distributed in the hope that it will be useful,
13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15 * GNU General Public License for more details.
16 *
17 * You should have received a copy of the GNU General Public License
18 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19 *
20 * Contributors:
21 * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22 *implementation
23 ******************************************************************************/
24
25#pragma once
26
28
29
30namespace pappso
31{
32/** \brief filter peptide string by size
33 * */
36{
37
38 public:
39 PeptideSizeFilter(unsigned int min_size, unsigned int max_size);
40 virtual ~PeptideSizeFilter();
41
42 // EnzymeProductInterface
43 void setPeptide(std::int8_t sequence_database_id,
44 const ProteinSp &protein_sp,
45 bool is_decoy,
46 const QString &peptide,
47 unsigned int start,
48 bool is_nter,
49 unsigned int missed_cleavage_number,
50 bool semi_enzyme) override;
51
52 // PeptideSinkInterface
53 void
55 {
56 m_sink = sink;
57 };
58
59
60 private:
61 EnzymeProductInterface *m_sink = nullptr;
62 const int m_minSize;
63 const int m_maxSize;
64};
65} // namespace pappso
filter peptide string by size
void setSink(EnzymeProductInterface *sink) override
#define PMSPP_LIB_DECL
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39
std::shared_ptr< const Protein > ProteinSp
shared pointer on a Protein object
Definition protein.h:47