libpappsomspp
Library for mass spectrometry
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tracedetectioninterface.h
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1
2/*******************************************************************************
3 * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4 *
5 * This file is part of the PAPPSOms++ library.
6 *
7 * PAPPSOms++ is free software: you can redistribute it and/or modify
8 * it under the terms of the GNU General Public License as published by
9 * the Free Software Foundation, either version 3 of the License, or
10 * (at your option) any later version.
11 *
12 * PAPPSOms++ is distributed in the hope that it will be useful,
13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15 * GNU General Public License for more details.
16 *
17 * You should have received a copy of the GNU General Public License
18 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19 *
20 * Contributors:
21 * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22 *implementation
23 ******************************************************************************/
24
25#pragma once
26
27#include "tracepeak.h"
28
29namespace pappso
30{
31class TraceDetectionInterface;
32
33typedef std::shared_ptr<TraceDetectionInterface> TraceDetectionInterfaceSPtr;
34typedef std::shared_ptr<const TraceDetectionInterface>
36
38{
39 public:
40 virtual void setTracePeak(TracePeak &xic_peak) = 0;
41};
42
44{
45 public:
46 /** @brief detect peaks on a trace
47 * @param trace the trace to detect peaks on
48 * @param sink the object to store peaks or stream it
49 * @param remove_peak_base if true, removes the area under the base of the
50 * peak
51 */
52 virtual void detect(const Trace &trace,
54 bool remove_peak_base) const = 0;
55};
56
57
58} // namespace pappso
virtual void detect(const Trace &trace, TraceDetectionSinkInterface &sink, bool remove_peak_base) const =0
detect peaks on a trace
virtual void setTracePeak(TracePeak &xic_peak)=0
A simple container of DataPoint instances.
Definition trace.h:148
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39
std::shared_ptr< TraceDetectionInterface > TraceDetectionInterfaceSPtr
std::shared_ptr< const TraceDetectionInterface > TraceDetectionInterfaceCstSPtr