libpappsomspp
Library for mass spectrometry
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ionisotoperatioscore.h
Go to the documentation of this file.
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/**
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* \file pappsomspp/psm/experimental/ionisotoperatioscore.h
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* \date 18/05/2019
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* \author Olivier Langella
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* \brief psm score computed using ion isotopes
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*/
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/*******************************************************************************
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* Copyright (c) 2019 Olivier Langella <Olivier.Langella@u-psud.fr>.
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*
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* This file is part of the PAPPSOms++ library.
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*
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* PAPPSOms++ is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* PAPPSOms++ is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
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*
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******************************************************************************/
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#pragma once
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#include "../../massspectrum/massspectrum.h"
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#include "../../peptide/peptide.h"
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namespace
pappso
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{
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class
PMSPP_LIB_DECL
IonIsotopeRatioScore
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{
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public
:
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IonIsotopeRatioScore
(
const
MassSpectrum
&spectrum,
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const
PeptideSp
&peptide_sp,
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unsigned
int
parent_charge,
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PrecisionPtr
precision,
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std::vector<PeptideIon> ion_list);
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virtual
~IonIsotopeRatioScore
();
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pappso::pappso_double
getIonIsotopeRatioScore()
const
;
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private
:
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pappso::pappso_double
m_ionIsotopeRatioScore
;
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};
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}
// namespace pappso
pappso::IonIsotopeRatioScore
Definition
ionisotoperatioscore.h:37
pappso::IonIsotopeRatioScore::m_ionIsotopeRatioScore
pappso::pappso_double m_ionIsotopeRatioScore
Definition
ionisotoperatioscore.h:49
pappso::MassSpectrum
Class to represent a mass spectrum.
Definition
massspectrum.h:73
pappso::PrecisionBase
Definition
precision.h:44
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition
exportinmportconfig.h:14
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition
aa.cpp:39
pappso::PeptideSp
std::shared_ptr< const Peptide > PeptideSp
Definition
aamodification.h:48
pappso::pappso_double
double pappso_double
A type definition for doubles.
Definition
types.h:50
pappsomspp
psm
experimental
ionisotoperatioscore.h
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